Software developed at the Raes lab

Image from MNM publication

Updated QMP script for Temporal Variation with determination of an optimum sampling depth.

Respiratory microbiome in COVID-19

Code from the analysis of the upper and lower respiratory tract microbiome of COVID-19 patients.

Benchmarking Microbiome Transformations

A benchmark of common microbiome data transformations using simulated quantitative datasets

QMP2

QMP2

QMP in PSC and IBD

GBM

Gut-brain modules

Manually curated gut-brain modules

QMP

QMP

Quantitative Microbiome Profiling

LotuS

LotuS

less OTU scripts and sdm

GMMs

GMMs

A tool to generate metabolic modules profiles from metagenomic samples

GOmixer

GOmixer

Get your gut meta-omics data analysis and visualization in one GO!

CoNet

CoNet

Cytoscape plugin

zoetendal et al first image of publication used as thumnail

Supplementary data from Zoetendal, Erwin G et al. ISME 2012